4. Do an intersubtype alignment, using all 20 sequences of HIV-1 subtype-B and subtype-E as the input sequences, then construct the consensus sequence.
 

              1
Eu48275       --------------------------------------------------------------------------------
Eu48278       --------------------------------------------------------------------------------
Eu48277       --------------------------------------------------------------------------------
Eu48272       --------------------------------------------------------------------------------
Eu48274       --------------------------------------------------------------------------------
Eu48269       --------------------------------------------------------------------------------
Eu48265       --------------------------------------------------------------------------------
Eu48267       --------------------------------------------------------------------------------
Eu48268       --------------------------------------------------------------------------------
Eu48273       --------------------------------------------------------------------------------
Bu84797       -------AAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCAGTGATTAT---AGGAATGCTACTGAT
Bu84796       -------AAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCAGTGATTAT---AGGAATGCTACTGAT
Bu84798       -------AAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCAGTGATTAT---AGGAATGCTACTGAT
Bu84793       -------AAAACCATGTGTAAAATTAACCCCACTCTGTATTACTTTAAATTGCACCAATTGGAAGAAGAATGATACTAAA
Bu84792       -------AAAACCATGTGTAAAATTAACCCCACTCTGTATTACTTTAAATTGCACCAATTGGAAGAAGAATGATACTACA
Bu84810       -------AAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTGATGATTTAGGGAATGCTACTAAT
Bu84807       -------AAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTGATGATTTAGGGAATGCTACTAAT
Bu848103      -------AAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACGTTAAATTGCACTGAC------CCAAATGTTACTAAT
Bu84802       AAAGCCTAAAGCCATGTGTAAAGTTAACCTCACTCTGTGTTACTTTAAAGTGCAAGGAT---------------------
Bu84801       AAAGCCTAAAGCCATGTGTAAAGTTAAACTCACTCTGTGTTACTTTAAAGTGCAAGGAT---------------------

              81
Eu48275       --------------------------------------------------------------------------------
Eu48278       --------------------------------------------------------------------------------
Eu48277       --------------------------------------------------------------------------------
Eu48272       --------------------------------------------------------------------------------
Eu48274       --------------------------------------------------------------------------------
Eu48269       --------------------------------------------------------------------------------
Eu48265       --------------------------------------------------------------------------------
Eu48267       --------------------------------------------------------------------------------
Eu48268       --------------------------------------------------------------------------------
Eu48273       --------------------------------------------------------------------------------
Bu84797       TATAAGAAT-------------------G--CTACTGATACCACTAGTAGTAACGAGGGAAAGATGGAGAGAGGAGAAAT
Bu84796       TATAGGAAT-------------------G--CTACTGATACCACTAGTAGTAACGAGGGAAAGATGGAGAGAGGAGAAAT
Bu84798       TATAAGAAT-------------------G--CTACTGATACCACTAGTAGAAACGAGGGAAAGATGGAGAGAGGAGAAAT
Bu84793       ACTAGTA---------------------GTAGTAGTACTACAACTAATAGTAGTTGGGGAGAGATAAAGGAGGGAGAAAT
Bu84792       ACTAATAATAGTAGTGCTACAGCTAATAGTAGTAGTACTACAACTAATAGTAGTTGGGGAGAGATAAAGGAGGGAGAAAT
Bu84810       ACCAATA---------------------G---TAGTGCCACTACCAATAGTAGTAGTTGGGAAGAAATGAAGGGGGAAAT
Bu84807       ACCAATA---------------------G---TAGTGCCACTACTAATAGTAGTAGTTGGGAAGAAATGAAGGGGGAAAT
Bu848103      AGCGAGA---------------------G---AA----------CAATAG----AGGGGGGA------------G-AAAT
Bu84802       ----------------------------------------------------------------------------AAAT
Bu84801       ----------------------------------------------------------------------------AAAT

              161
Eu48275       --------------------------------------------------------------------------------
Eu48278       --------------------------------------------------------------------------------
Eu48277       --------------------------------------------------------------------------------
Eu48272       --------------------------------------------------------------------------------
Eu48274       --------------------------------------------------------------------------------
Eu48269       --------------------------------------------------------------------------------
Eu48265       --------------------------------------------------------------------------------
Eu48267       --------------------------------------------------------------------------------
Eu48268       --------------------------------------------------------------------------------
Eu48273       --------------------------------------------------------------------------------
Bu84797       AAAAAACTGCTCTTTCAATATCACCACAAGCATAAAAAATAAGATGCAGAAAGAATATGCACTTTTCTATAAACTTGATA
Bu84796       AAAAAACTGCTCTTTCAATATCACCACAAGCATAAAAAATAAGATGCAGAAAGAATATACACTTTTCTATAAACTTGATA
Bu84798       AAAAAACTGCTCTTTCATTATCACCACAAGCATAAAAAATAAGATGCAGAAAGAATATGCACTTTTCTATAAACTTGATA
Bu84793       AAAGAACTGCTCTTTCAATATCACCACAAGCATAAGAGACAAGGTGAAGAAAGAATATGCACTTTTTTATAGCCTTGATG
Bu84792       AAAGAACTGCTCTTTCAATATCACCACAAGCATAAGAGACAAGGTGAAGAAAGAATATGCACTTTTTTATAGCCTTGATG
Bu84810       GAAAAGATGCTCTTTCAATATCACCACAAGCATAAGAGATAAGATTAAGAAAGAACATGCACTTTTCTATAGACTTGAGG
Bu84807       GAAAAGATGCTCTTTCAATATCACCACAAGCATAAGAGATAAGATTAAGAAAGAACATGCACTTTTCTATAGACTTGATG
Bu848103      AAAAAATCGCTCTTTCAATATCACCACAAACATAAGAGATAGGTTTCAGAAAGAATATGCACTTTTTTATAAACTTGATG
Bu84802       GACAAACTGCTCTTTCAACATCACCACAAGTATAAGAGATAAGGTGCAGAAAGAATATGCACTTTTGTATAAACTTGATG
Bu84801       GACAAACTGCTCTTTCAACATCACCACAAGTATAAGAGATAAGGTGCAGAAAGAATATGCACTTTTGTATAAACTTGATG

              241
Eu48275       --------------------------------------------------------------------------------
Eu48278       --------------------------------------------------------------------------------
Eu48277       --------------------------------------------------------------------------------
Eu48272       --------------------------------------------------------------------------------
Eu48274       --------------------------------------------------------------------------------
Eu48269       --------------------------------------------------------------------------------
Eu48265       --------------------------------------------------------------------------------
Eu48267       --------------------------------------------------------------------------------
Eu48268       --------------------------------------------------------------------------------
Eu48273       --------------------------------------------------------------------------------
Bu84797       TAGTACCAATAG---------ATAATACAAGCTATACATTGATAAGTGGTAACACCTCAGTCATTACACAGGCCTGTCCA
Bu84796       TAGTACCAATAG---------ATAATACAAGCTATACATTGATAAGTGGTAACACCTCAGTCATTACACAGGCCTGTCCA
Bu84798       TAGTACCAATAG---------ATAATACAAGCTATACATTGATAAGTGGTAACAACTCAGTCATTACACAGGCCTGTCCA
Bu84793       TAGTACCAATAGAAAA---TGATAATACTAGCTATAGGTTGAGAAGTTGTAACACCTCAGTCATTACACAAGCCTGTCCA
Bu84792       TAGTACCAATAGAAAA---TGATAATACTAGCTATAGGTTGAGAAGTTGTAACACCTCAGTCATTACACAAGCCTGTCCA
Bu84810       TAGTACCAATAGATAA---TGATAATACCACATATAGGTTGATGAATTGTAATACCTCAGTCATTACACAGGCCTGTCCA
Bu84807       TAGTACCAATAGATAA---TGATAATACCACATATAGGTTGATAAATTGTAATACCTCAGTCATTACACAGGCCTGTCCA
Bu848103      TAATACCATTAGGTAA---TGATAATACTAGCTATAGGTTGATAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCA
Bu84802       TAGTACCAATAGAAGAAGATGACAATACTAGCTATAGATTGATAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCA
Bu84801       TAGTACCAATAGAAGAAGATGACAATACTAGCTATAGATTGATAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCA

              321
Eu48275       --------------------------------------------------------------------------------
Eu48278       --------------------------------------------------------------------------------
Eu48277       --------------------------------------------------------------------------------
Eu48272       --------------------------------------------------------------------------------
Eu48274       --------------------------------------------------------------------------------
Eu48269       --------------------------------------------------------------------------------
Eu48265       --------------------------------------------------------------------------------
Eu48267       --------------------------------------------------------------------------------
Eu48268       --------------------------------------------------------------------------------
Eu48273       --------------------------------------------------------------------------------
Bu84797       AAGGTATCCTTTGAACCAATTCCCATACATTATTGTGTCCG---TGGTTTTGCGATTCTAAAGTGTAATGATAAGAAGTT
Bu84796       AAGGTATCCTTTGAACCAATTCCCATACATTATTGTGTCCG---TGGTTTTGCGATCCTAAAGTGTAATGATAAGAAGTT
Bu84798       AAGGTATCCTTTGAACCAATTCCCATACATTATTGTGTCGG---TGGTTTTGCGATTCTAAAGTGTAATGATAAGAAGTT
Bu84793       AAGGTAACTTTTGAGCCAATTCCCATACATTATTGTACCCCGGCTGGTTTTGCGATCCTGAAGTGTAAAGATAAAAAGTT
Bu84792       AAGGTAACTTTTGAGCCAATTCCCATACATTATTGTACCCCGGCTGGTTTTGCGCTTCTGAAGTGTAAAGATAAAAAGTT
Bu84810       AAGGTATCATTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATAATAAGACGTT
Bu84807       AAGGTATCATTAGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATAATAAGACGTT
Bu848103      AAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGTTGGTTTGGCGATTCTAAAGTGTAAAGATAAGAAGTT
Bu84802       AAGACATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATGATAAGAAGTT
Bu84801       AAGGCATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATGATAAGAAGTT

              401
Eu48275       ---------------------------------------------------------GCCAGTGGTATCAACTCAATTGC
Eu48278       ---------------------------------------------------------GCCAGTGGTATCAACTCAATTGC
Eu48277       ---------------------------------------------------------GCCAGTGGTATCAACTCAATTGC
Eu48272       --------------------------------------------------------------------------------
Eu48274       ---------------------------------------------------------GCCAGTGGTATCAACTCAATTGC
Eu48269       ---------------------------------------------------------GCCAGTGGTATCAACTCAATTGC
Eu48265       ---------------------------------------------------------GCCAGTGGTATCAACTCAATTGC
Eu48267       ---------------------------------------------------------GCCAGTGGTATCAACTCAACTGC
Eu48268       ---------------------------------------------------------GCCAGTGGTATCAACTCAACTGC
Eu48273       ---------------------------------------------------------GCCAGTGGTATCAACTCAATTGC
Bu84797       CAGTGGAAAAGGAGAATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGC
Bu84796       CAATGGAAAAGGAGAATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGC
Bu84798       CAATGGAAAAGGAGCATGTAAAAATGTCAGGACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGC
Bu84793       CAATGGAACAGGACCATGCAAAAACGTTAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTGC
Bu84792       CAATGGAACAGGACCATGCAAAAATGTTAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTGC
Bu84810       CGAGGGAAAAGGACCATGTAAAAATGTCAGTACAGCCCAATGCACACATGGAATTAAGCCAGTAGTGTCAACTCAACTGC
Bu84807       CGAGGGAAAAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTGTCAACTCAACTGC
Bu848103      CAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTATCAACTCAACTGT
Bu84802       CAATGGAACAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGT
Bu84801       CAATGGAACAGGACCATGTAAAAACGCCAGTACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGT

              481
Eu48275       TGTTAAATGGCAGTCTAGCAGAAGAAGAGATAATAATCAGATCTGAAAATCTCACAAACAATGCCAAAACCATAATAGTG
Eu48278       TGTTAAATGGCAGTCTAGCAGAAGAAGAGATAATAATCAGATCTGAGAATCTCACAAACAATGCCAAAACCATAATAGTG
Eu48277       TGTTAAATGGCAGTCTAGCAGAAGAAGAGATAATAATCAGATCTGAAAATCTCACAAACAATGCCAAAACCATAATAGTG
Eu48272       --------------------GAAGAAGAGATAATAATCAGATCTGAAAATCTCACAAACAATGCCAAAACCATAATAGTG
Eu48274       TGTTAAATGGCAGTCTAGSAGAAGAAGAGATAATAATCAGATCTGAAAATCTCACAAACAATGCCAAAACCATAATAGTG
Eu48269       TGTTAAATGGCAGTCTTGCAGAAGAAGAGATAATAATCAGATCTGAAAATCTCACAAACAATGCCAAAACCATAATAGTG
Eu48265       TGTTAAATGGCAGTCTAGCAGAAGAAGAGATAATAATCAGATCTGAAAATCTCACAAACAATGCCAAAACCATAATAGTG
Eu48267       TGTTAAATGGCAGTCTAGCAGAAGAAGAGATAATAATCAGATCTGAAAATCTCACAAACAATGCCAAAACCATAATAGTG
Eu48268       TGTTAAATGGCAGTCTAGCAGAAGAAGAGATAATAATCAGATCTGAAAATCTCACAAACAATGCCAAAACCATAATAGTG
Eu48273       TGTTAAATGGCAGTCTAGCAGAAGAAGAGATAATAATCAGATCTGAAAATCTCACAGACAATACCAAAACCATAATAGTG
Bu84797       TGTTAAATGGCAGTCTAGCAGAAGAAGAGGTGGTAATTAGATCTGACAATTTCACAGACAATACTAAAACCATAATAGTA
Bu84796       TGTTAAATGGCAGTCTAGCAGAAGAAGAGGTGGTAATTAGATCTGACAATTTCACAGACAATACTAAAACCATAATAGTA
Bu84798       TGTTAAATGGCAGTCTAGCAGAAGAAGAGGTGGTAATTAGATCTGACAATTTCACAGACAATACTAAAACCATAATAGTA
Bu84793       TGTTAAATGGCAGCCTAGCAGAAGAAGAGGTAATAATTAGATCTGCCAATTTCTCAAACAATGCTAAAATCATAATAGTA
Bu84792       TGTTAAATGGCAGCCTAGCAGAAGAAGAGGTAATAATTAGATCTGCCAATTCCTCAAACAATGCTAAAATCATAATAGTA
Bu84810       TGTTAAATGGCAGTCTAGCAGAAGAAGAGGCAATAATTAGATCTGACAATATCACAGACAATACTAAAACCATTATAGTA
Bu84807       TGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAATAATTAGATCTGACAATATCACAGACAATACTAAAACCATTATAGTA
Bu848103      TGTTATATGGCAGTCTAGCAGAAGAAGACATAGTAATTAGATCCGCCAATCTCACAGACAATGCTAAAAACATAATAGTA
Bu84802       TGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATCAGATCTGCCAATTTCACAGACAATGCTAAAACCATAATAGTA
Bu84801       TGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATCAGATCTGCCAATTTCACAGACAATGCTAAAACCATAATAGTA

              561
Eu48275       CACCTTAATAAATCTGTAGAAATCAATTGTACCAGACCCTCCAACAATACAAGAACAAGTATAACTATGGGACCAGGACA
Eu48278       CATCTTAATAAATCTGTAGAAATCAATTGTACCAGACCCTCCAACAATACAAGAACAAGTATAACTATGGGACCAGGACA
Eu48277       CACCTTAATAAATCTGTAGAAATCAATTGTACCAGACCCTCCAACAATACAAGAACAAGTATAAATATAGGACCAGGACA
Eu48272       CACCTTAATGAATCTGTAGAAATCAATTGTACCAGACCCTCCAACAATACAAGAACAAGTGTAAGAATAGGACCAGGACA
Eu48274       CACCTTAATAAATCTGTAGAAATCAATTGTACCAGACCCTCCAACAATACAAGAACAAGTATAACTATAGGACCAGGACG
Eu48269       CACCTTAATAAATCTGTGGAAATCAATTGTACCAGACCCTCCGACAGGATGAGAACACCTATGAGAATAGGACCAGGACG
Eu48265       CACCTTAATAAATCTGTAGAAATCAATTGTACCAGACCCTCCGATATTACAAGAATAAGTACAAGAATAGGACCAGGACG
Eu48267       CACCTTAATAAATCTGTAGAAATCAATTGTACCAGACCCTTCTA---TACAAGAATAAGTATGACTAGGGGACCAGGACA
Eu48268       CACCTTAATAAATCTGTAGAAATCAATTGTACCAGACCCTCCAACAAGAAAAGACAAAGGGTAACTATAGGGCCAGGACG
Eu48273       CACCTTAATAAATCTGTAGAAATCAATTGTACCAGACCCTCCAACAATAAAAGAACAAGGATAACTATAGGACCAGGACG
Bu84797       CAGCTGAAAGAATCTGTAGAAATTAATTGTATAAGACCCAACAATAATACAAGAAAAGGTATACATATAGGACCAGGGAG
Bu84796       CAGCTGAAAGAATCTGTAGAAATTAATTGTATAAGACCCAACAATAATACAAGAAAAGGTATACATATAGGACCAGGGAG
Bu84798       CAGCTGAAAGAATCTGTAGAAATTAATTGTATAAGACCCAACAATAATACAAGAAAAGGTATACATATTGGACCAGGGAG
Bu84793       CAGTTGAGGGAACCTGTAGAAATTAATTGTACAAGACCCAGCAACAATACAATAAAAGGTATACACATAGGACCAGGGAG
Bu84792       CAGTTGAGGGAACCTGTAGAAATTAATTGTACAAGACCCAGCAACAATACAATAAAAGGTATACACATAGGACCAGGGAG
Bu84810       CAGCTAAACGAATCTGTAGTAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACATATAGGCCCGGGGAG
Bu84807       CAGCTAAACGAATCTGTAGTAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACATATAGGACCAGGGAG
Bu848103      CAGCTGAATGAATCTGTAACAATGAATTGTACAAGACCCAACAACAATACAATGAAAAGTATACATATAGGACCAGGCAG
Bu84802       CATCTAAATGAAACTGTAAAAATTAATTGTACAAGACTTGGCAACAATACAAGAAAAAGTATAAATATAGGACCAGGGAG
Bu84801       CATCTAAATGAAACTGTAAAAATTAATTGTACAAGACTTGGCAACAATACAAGAAAAAGTATAAATATAGGACCAGGGAG

              641
Eu48275       AGTATTCTATAGAACAGGAGACATAATAGGAGATATAAGAAAAGCATATTGTGAGATTAATGGAACAAAATGGAATGAAG
Eu48278       AGTATTCTATAGAACAGGAGACATAATAGGAGATATAAGAAAAGCATATTGTGAGATTAATGGAACAAAATGGAATGAAG
Eu48277       AGTATTTTATAGAACAGGAGACATAATAGGAGATATAAGAAAAGCATATTGTGAGATTAATGAAACAAAATGGACTAAAG
Eu48272       AGTATTCTATAGAACAGGAGACATAACAGGAGACATAAGAAAAGCATATTGTGAGATTAATGAAACAAAATGGAATGAAA
Eu48274       AGTATTCTATAGAACAGGAGACATAACAGGAGATATAAGAAAAGCATATTGTGAGATTAATGGAACAAAATGGAATGAAG
Eu48269       AGTATTCTATAAAACAGGAAACATAATGGGAGATAGAAGAACAGCATACTGTGAAATTAATGGAACAAAATGGAATAGAG
Eu48265       AGTATTCTATAAAACAGGAAACATACTAGGAGATATAAGAAAAGCATATTGTGAGATTAATGGAACAAAATGGAATGAAA
Eu48267       CGTATTCTATAGAACAGGAAAAATAGTAGGAGATCCAAGAAAAGCATATTGTGAGATTAATGGAACAAAATGGAATGAAG
Eu48268       AGTATACTATAGCACAGGAGACATAATGGGAGATATAAGAAAAGCACATTGTGAAATTAATGGAACAAAATGGAATAAAG
Eu48273       AGTATTCTATAGAACAGGAGAAATAATAGGAGATATAAGAAAAGCATATTGTGAAATTAATGGAACAAAATGGAATAAAG
Bu84797       AGCATGGTATGCAACAGGAGAAATAGTAGGAGATATAAGACAGGCATATTGTAACATTAGTAGAACAAAATGGAATAACA
Bu84796       AGCATGGTATGCAACAGGAGAAATAGTAGGAGATATAAGACAGGCATATTGTAACATTAGTAGAACAAAATGGAATAACA
Bu84798       AGCATGGTATGCAACAGGAGAAATAGTAGGAGATATAAGACAGGCATATTGTAACATTAGTAGAACAAAATGGAATAACA
Bu84793       AGCATTTTATGCAACAGGAGACATACGAGGAGATATAAGACAAGCACATTGTAACATTAGTGGAGCAAAATGGAATAACA
Bu84792       AGCATTTTATGCAACAGGAGACATACGAGGAGATATAAGACAAGCACATTGTAACATTAGTGGAGCAAAATGGAATGACA
Bu84810       TGCATTTTTTGCAACAGGAGAAATAATAGGAGATATGAGACAAGCACACTGTAACCTTAGTAGAACACAATGGAATAACA
Bu84807       TGCATTTTTTGCAACAGGAGAAATAATAGGAGATATAAGACAAGCACACTGTAACCTTAGTAGAACACAATGGAATAACA
Bu848103      AGCAATTTATGCAACAGGAAACATAATAGGAGATATAAGACAAGCACATTGTAACATTAGTGGGACAAAATGGAATGACA
Bu84802       AGTACTCTATGCAACAGGAGAAATAATAGGAGACATAAGACAAGCACATTGTAACATTAGTAGAGCAAAATCGAATAACA
Bu84801       AGTACTCTATGCAACAGGAGAAATAATAGGAGACATAAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATAACA

              721
Eu48275       CTTTAAAACAGGTAACTGGAAAACTAAAAGAGCACTTTAA-------TAAGA--------CAATAATCTTTCAACCACCC
Eu48278       CTTTAAAACAGGTAACTGGAAAACTAAAAGAGCACTTTAA-------TAAGA--------CAATAATCTTTCAGCCACCC
Eu48277       TTTTAAAACAGGTAACTGAAAAATTAAAAGAGCACTTTAAGA----ATAAGA--------CAATAATCTTTCAACCACCC
Eu48272       CTTTAAAACAGGTAACTGAAAAATTGAAAGAGCACTTTAAAA----ATAAGA--------CAATAATCTTTCAACCACCC
Eu48274       TTYTAAAACAGGTAACTGAAAAATTAAAAGAGCACTTTAAGA----ATAAGA--------CAATAATCTYTAAACCACCC
Eu48269       TTTTAAAACAGGTAATGGGAAAATTAAAAGAGCACTTTAATA----ATAAGA--------CAATAACCTTTCAACCACCC
Eu48265       CTTTAAAACAGGTAGCTGGAAAATTAAAAGAGCACTTTAATA----A---GA--------CAATAATCTTTAAACCACCC
Eu48267       CTTTAAAACAGGTAACTGAAAAATTAAAAGAGCACTTTAA-------TAAGA--------CAATAATCTTTCAACCACCA
Eu48268       TTTTAAAACAGGTAACTGAAAAATTAAAAGAGCACTTTAA-------TAAGA--------CAATAGTCTTTCAACCACCC
Eu48273       TTTTAAAACAGGTAACTGAAAAATTAAAAGGGCACTTTAA-------TAAGA--------CAATAGTCTTTCAACCACCC
Bu84797       CTTTAATACAGATAGCTAACAAATTAAAAGAACAATATA-------ATACAA--------CAATAAGCTTTAATCGATCC
Bu84796       CTTTAATACAGATAGCTAACAAATTAAAAGAACAATATA-------ATACAA--------CAATAAGCTTTAATCGATCC
Bu84798       CTTTAATACAGATAGCTAACAAATTAAAAGAACAATATA-------ATACAA--------CAATAAGCTTTAATCGATCC
Bu84793       CTTTAAAGAAGGTAGTTATAAAATTAAAAGAACAATTTCCAA----ATAAAA--------CAATAGTCTTTAACCATTCC
Bu84792       CTTTAAAGAAGGTAGTTATAAAATTAAAAGAACAATTTCCAA----ATAAAA--------CAATAGTCTTTAACCATTCC
Bu84810       CTTTAGGAAAGATAGTCATAAAATTAAGAGAACAATTTAGAAAACAATTTGGAGAAAAAACAATAGTCTTTAATCGATCC
Bu84807       CTTTAGGAAAGATAGTCATAAAATTAAGAGAACAATTTAGAAAACAATTTGGAGAAAAAACAATAGTCTTTAATCGATCC
Bu848103      CTTTGAACAAGATAGCTATAAAATTAAGAGAACAATTTA-------ATGAGG--------CAATAGTCTTTAATCAATCC
Bu84802       CTTTAAAACAGATAGTTAGAAAATTAAGAGAACAATTTGGGA----ATAAAA--------CAATAGTCTTTAATCAATCC
Bu84801       CTTTAAAACAGATAGTTAGAAAATTAAGAGAACAATTTGGGA----ATAAAA--------CAATAGTCTTTAATCAATCC

              801
Eu48275       TCAGGAGGAGATCTAGAAATTACAATGCATCATTTTACTTGTAGAGGGGAATTTTTCTATTGCAATACAACACAACTGTT
Eu48278       TCAGGAGGAGATCTAGAAATTACAATGCATCATTTTAGTTGTAGAGGGGAATTTTTCTATTGCAATACAACACAACTGTT
Eu48277       TCAGGAGGAGATCTAGAAATTACAATGCATCACTTTAATTGTAAAGGGGAATTTTTCTATTGCAATACAACACAACTGTT
Eu48272       TCAGGAGGAGATCTAGAAATTACAATGCTTCATTTTAATTGTAGAGGGGAATTTTTCTATTGCAATACATCAAAACTGTT
Eu48274       TCAGGAGGAGATCTAGAAATTACAATGCATCATTTTAATTGTAGAGGGGAGTTTTTCTATTGCAATACAACAAATTTGTT
Eu48269       TCAGGAAGAGATCTAGAAATCACAATGCATCATTTTAATTGTAGAGGGGAATTTTTCTATTGCAATACAACACGACTGTT
Eu48265       TCAGGAGGAGATCTAGAAATTACAATGCATCATTTTAATTGTAGAGGGGAATTTTTCTATTGCAATACAACACAACTGTT
Eu48267       TCAGGAGGAGACCTAGAAATTACAATGCATCATTTTAATTGTAGAGGGGAATTTTTCTATTGCAATACAACAAAACTGTT
Eu48268       TCAGGAGGAGATCTAGAAATTACAATGCATCATTTTAATTGTAGAGGGGAATTTTTCTATTGCAATACAACAAGTCTGTT
Eu48273       TCAGGAGGAGATCTAGAAATTACAATGCATCATTTTAATTGTAGAGGGGAATTTTTCTATTGCAATACAACAAAACTGTT
Bu84797       TCAGGAGGGGACCCAGAAATTGTAACGCATAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTT
Bu84796       TCAGGAGGGGACCCAGAAATTGTGACGCATAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCTACACAACTGTT
Bu84798       TCAGGAGGGGACCCAGAAATTGTAACGCATAGTCTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTT
Bu84793       TCAGGAGGGGACCCAGAAATTGTAATGCACAGTTTTAATTGTCAAGGGGAATTTTTCTACTGTAATACAACAAAGCTGCT
Bu84792       TCAGGAGGGGACCCAGAAATTGTAATGCACAGTTTTAATTGCCAAGGGGAATTTTTCTACTGTAATACAACAAAGCTGTT
Bu84810       TCAGGAGGGGACCCGGAAATTGCAATGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAACACAACAGCACTGTT
Bu84807       TCAGGAGGGGACCCGGAAATTGCAATGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAACACAACAGCACTGTT
Bu848103      TCAGGAGGGGACCCAGAAATTGCAACGCTCAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTT
Bu84802       TCAGGAGGGGACCCAGAAATTGTAATGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACACAACTGTT
Bu84801       TCAGGAGGGGACCCAGAAATTGTAATGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTT

              881
Eu48275       TAATAATACTTGCATAGGAAATG---------AAACCATGGAGGGGTGTAATGGCAC------------TATCATACTTC
Eu48278       TAATAGTACTTGCATAAGAAATG---------AAAGCATGGAGGGGTGTAATGGCAC------------TATCATACTTC
Eu48277       TAATAATACTTGCATAAAAAATG---------AAACCATGGGGGGGTGTAATGGCAC------------TATCATACTTC
Eu48272       TAATACCACTCGCATAGGAAATG---------AAACCAAGGAGGAGGGTAATGGCAC------------TATCATACTTC
Eu48274       TAATAATACTTGCAT---AAATG---------AAACCATGRGAGGGTGTAATGACAC------------TATCACACTTC
Eu48269       TAATAATACTTGCATAGGAAATG---------AAACTAAGGAGGGGTGTAATGGCAC------------TATCACACTTC
Eu48265       TAATAGTACTTGGCCAGGAAATG---------AAACCATGGAGAAGTATAATGGCAC------------TATCACACTTC
Eu48267       TAATAGTACCGGGATAGGAAATG---------AAACCATGAAGGGGTATAATGACAC------------TATCACACTTC
Eu48268       TAATAATACTTGCATAGGAAGTG---------AAACCCTG------TGTAATGGCAA------------GATCACACTTC
Eu48273       TAATAATACTTGCATA---AATG---------AAACCATGGGGGGGTGTAATGACAC------------TATCACACTTC
Bu84797       TAATAGTACTTGGAATTTAAATGGTACTTGGAATTTTACTGCAGGGTCAAATGAAACTG---AAGGCAATATCACACTCC
Bu84796       TAATAGTACTTGGAATTTAAATGGTACTTGGAATTTTACTGCGGGGTCAAATGAAACTG---AAGGCAATATCACACTCC
Bu84798       TAATAGTACTTGGAATTTAAATGGTACTTGGAATTTTACTGCAGGGTCAAATGAAACTG---AAGGCAATATCACACTCC
Bu84793       TAATAGTACTTGGAATG---------------ATACTACAGAGTC---AAATAACAATG---ATAGTACTATTACACTCC
Bu84792       TAATAGTACTTGGAATAGCACT---TGGAATAATACTACAGAGTC---AAATAACAATG---ATAGTACTATTACACTCC
Bu84810       TAATAGTACCTGGAATGTTACTAAAGGGTTGAATAACACTGAAGG---AAATAGCACAGGAGATGAAAATATCATACTCC
Bu84807       TAATAGTACCTGGAATGTTACTAAAAGGTTGAATAACACTGAAGG---AAATAGCACAGGAGATGAAAATATCATACTCC
Bu848103      TAATAGTACTTGGAATAGTACT---GGGTCAAATAACACTAAAGG---AAAGGACACA----------AT--CACACTCC
Bu84802       TAATAGTACTTGGAATAATACT------TGGAAGGATCCTAACAG---GAGTGACA------------ATATCACACTCC
Bu84801       TAATAGTACTTGGAATAATACT------TGGAAGGATCCTAACAG---GAGCGACA------------ATATCACACTCC

              961
Eu48275       CATGCAAGATAAAGCAAATTATAAACATGTGGCAGGGAGCAGGACAAGCAATGTATGCTCCTCCCATCAGTGGAAGAATT
Eu48278       CATGCAAGATAAAACAAATTATAAACATGTGGCAAGGCGCAGGACAAGCAATGTATGCTCCTCCCATCAGTGGAAGAATT
Eu48277       CATGCAAGATAAAGCAAATTATAAACATGTGGCAGGGAGCAGGACAAGCAATGTATGCTCCTCCCATCAGTGGAAGAATT
Eu48272       CATGCAGGATAAAGCAAATTATAAACATGTGGCAGGGAGTAGGACAAGCAATGTATGCTCCTCCCATCAGTGGAAGCATT
Eu48274       CATGCAAGATAAAGCAAATTATAAACATGTGGCAGGGAGCAGGACAAGCAATGTATGCTCCTCCCATCAGTGGAAGAATT
Eu48269       CATGCAAGATAAAGCAAATTATAAAAATGTGGCAGGGAGTAGGACAAGCAATGTATGCTCCTCCCATCAGTGGAATAATT
Eu48265       CATGCAAAATAAAGCAAATTATAAACATGTGGCAGGGAGCAGGACAAGCAATGTATGCTCCTCCCATCAGTGGAACAATT
Eu48267       CATGCAGGATAAAGCAAATTATAAACATGTGGCAGGGAGCAGGACAAGCAATGTACGCTCCTCCAATCAAAGAAAGAATT
Eu48268       CATGCAAGATAAAGCAAATTATAAACATGTGGCAGGGAGTAGGACAAGCTATGTATGCTCCTCCCATTACTGGAAAAATT
Eu48273       CATGCAAGATAAAGCAAATTGTAAACATGTGGCAGGGAGCAGGACAAGCAATGTATGCTCCTCCCATCAGTGGAAGAATT
Bu84797       CATGCAGAATAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACGAATA
Bu84796       CATGCAGAATAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATA
Bu84798       CATGCAGAATAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATT
Bu84793       CATGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGAGAAATT
Bu84792       CATGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGAGAAATT
Bu84810       CATGTAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATT
Bu84807       CATGTAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATT
Bu848103      CATGCAGAATAAGACAAATTATAAACATGTGGCAGAAAATAGGAAAAGCAATGTATGCCCCTCCCATCAAAGGGCAAATT
Bu84802       CATGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTACGCCCCTCCCATCAGAGGGGAAATT
Bu84801       CATGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTACGCCCCTCCCATCAGAGGGGAAATT

              1041
Eu48275       AATTGTGTATCAAATATTACAGGAATACTATTGACAAGAGATGGTGGTG------------------CTAATAATACGGC
Eu48278       AATTGTGTATCAAATATTACAGGAATACTATTGACAAGAGATGGTGGTG------------------CTAATAACACGGC
Eu48277       AATTGTGTATCAAATATTACAGGAATACTATTGACAAGAGATGGTGGTG------------------CTAATAATACGAC
Eu48272       AATTGTGTATCAAATATTACAGGAATACTATTGACAAGAGATGGTGGTG------------------ATAATAGTGATAC
Eu48274       AATTGTGTATCAAATATTACAGGAATACTATTGACAAGAGATGGTGGTG------------------CTCATAATGATAC
Eu48269       AATTGTTTATCAAATATTACAGGAATACTATTGACAAGAGATGGTGGTC------------------CTAATAATATGAC
Eu48265       AATTGTGTATCAAATATTACAGGAATACTATTGACAAGAGATGGTGGTC------------------CTAATAGTACGAA
Eu48267       AATTGTGTATCAAATATTACAGGAATACTATTGACAAGAGATGGTGGTA------------------TTAATAGTACGAC
Eu48268       AATTGTGTATCAAATATTACAGGAATACTATTGACAAGAGATGGTGGT---------------------AATAATACGAA
Eu48273       AATTGTGTATCAAATATTACAGGAATACTATTGACAAGAGATGGTGGTGGT-------G-----ATGCTAATAATAGGAA
Bu84797       AGATGCTCATCAAACATTACAGGGATGATATTAACAAGGGATGGTGGTAACGAG------AACAATAATGAGAGCACTAA
Bu84796       AGATGCTCATCAAACATTACAGGGATGATATTAACAAGGGATGGTGGTAACGAG------AACAATAATGAGAGCAGTAC
Bu84798       AGATGCTCATCAAACATTACAGGGATGATATTAACAAGGGATGGTGGTAACGAG------AACAATAATGAGAGCAGTAC
Bu84793       AAATGTTCATCAAATATTACAGGACTACTGTTAACAAGAGATGGTGGTATT---------AACAC------TAGCGATGC
Bu84792       AAATGTTCATCAAATATTACAGGACTACTGTTAACAAGAGATGGTGGTATT---------AACAC------TAGCGATGC
Bu84810       AGATGTTCATCAAATATTACAGGGCTGCTACTAACAAGAGATGGTGGTAGTAAG------AACGA------GAGCATCAC
Bu84807       AGATGTTCATCGAATATTACAGGGCTGCTACTAACAAGAGATGGTGGTAGTAAG------AACGA------GAGCATCAC
Bu848103      AGATGTTCATCAAATATTACAGGGCTAATATTAATAAGAGATGGTGGTAACAAC------AACAT------GAGCAAGAC
Bu84802       AGATGTTCATCAAATATCACAGGGCTGCTACTAACAAGAGATGGTGGTAATGACGATGGTAATGACACGACCACAAACAG
Bu84801       AGATGTTCATCAAATATCACAGGGCTGCTACTAACAAGAGATGGTGGTAATGACGATGGTAATGACACGACCACAAACAG

              1121
Eu48275       TAACGAGACCTTCAGACCTGGAGGAGGAAA--------------------------------------------------
Eu48278       TAACGAGACCTTCAGACCTGGAGGAGGAAA--------------------------------------------------
Eu48277       TAACGAGACCTTCAGACCTGGAGGAGGAAA--------------------------------------------------
Eu48272       TAATGA--------------------------------------------------------------------------
Eu48274       TAAGGAGATCTTCAGACCTGGAGGAGGAAAAAGCC---------------------------------------------
Eu48269       TAATGAGACCTTCAGACCTGGAGGAGGAAA--------------------------------------------------
Eu48265       TAATGAGACCTTCAGACCTGGAGGAGGAAA--------------------------------------------------
Eu48267       TAACGAGACCTTCAGACCTGGAGGAGGAAAAAGCC---------------------------------------------
Eu48268       TAACGAGACCTTCAGACCTGGAGGAGGAAA--------------------------------------------------
Eu48273       GAACGAGACCTTCAGACCTGGAGGAGGAAA--------------------------------------------------
Bu84797       TACTGAGATCTTCAGACCGGGAGGAGGAGATACGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAA
Bu84796       TACTGAGACCTTCAGACCGGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAA
Bu84798       TACTGAGACCTTCAGACCGGGAGGAGGAGATATGAGGAACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAA
Bu84793       CACCGAGACCTTCAGACCGGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTGAAAA
Bu84792       CACCGAGACCTTCAGACCGGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTGAAAA
Bu84810       CACCGAGGTCTTCAGACCTGGAGGAGGTGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAA
Bu84807       CACCGAGGTCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAA
Bu848103      CACCGAGACCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAA
Bu84802       GACCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAGATATAAAGTAGTAATAA
Bu84801       GACCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAGATATAAAGTAGTAAAAA

              1201
Eu48275       --------------------------------------------------------------------------------
Eu48278       --------------------------------------------------------------------------------
Eu48277       --------------------------------------------------------------------------------
Eu48272       --------------------------------------------------------------------------------
Eu48274       --------------------------------------------------------------------------------
Eu48269       --------------------------------------------------------------------------------
Eu48265       --------------------------------------------------------------------------------
Eu48267       --------------------------------------------------------------------------------
Eu48268       --------------------------------------------------------------------------------
Eu48273       --------------------------------------------------------------------------------
Bu84797       TTGAGCCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGG----------
Bu84796       TTGAGCCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAGCGCTAGGA
Bu84798       TTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAGCGCTAGGA
Bu84793       TTGAGCCATTAGGAGTAGCACCCACCAAGGCCAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGT---AACACTAGGA
Bu84792       TTGAGCCATTAGGAGTAGCACCCACCAAGGCTAAGAGGAGAGTGGTGCAGAGAGAAAAGAGAGCAGT---TACACTAGGA
Bu84810       TTGAACCATTAGGAGTAGCGCCCACCAAGCCAAAGAGAAGAGTGGTG---------------------------------
Bu84807       TTGAACCATTAGGAGTAGCGCCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAACAATAGGA
Bu848103      TTGAACCATTAGGAGTAGCACCCACCAGGCCAAAGAGAAGAGTGGT----------------------------------
Bu84802       TTGAACCATTAGGAATAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGT---AGGACTAGGA
Bu84801       TTGAACCATTAGGAATAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGT---AGGACTAGGA

              1281
Eu48275       --------------------------------
Eu48278       --------------------------------
Eu48277       --------------------------------
Eu48272       --------------------------------
Eu48274       --------------------------------
Eu48269       --------------------------------
Eu48265       --------------------------------
Eu48267       --------------------------------
Eu48268       --------------------------------
Eu48273       --------------------------------
Bu84797       --------------------------------
Bu84796       GCTATGTTCCTTGGGTTCT-------------
Bu84798       GCTATGTTCCTTGGGTTCT-------------
Bu84793       GCTATGTTCCTT--------------------
Bu84792       GCTATGTTCCTT--------------------
Bu84810       --------------------------------
Bu84807       GCTATGTTCCTTGGGTTCTTGGG---------
Bu848103      --------------------------------
Bu84802       GCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGG
Bu84801       GCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGG

IntersubtypeBE coserve

>BEcon:
GCCAGTGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGATAATAATC
AGATCTGAAATCTCACAAACAATGCAAAACCATAATAGTCACTAATGAATCTGTAGAAAT
AATTGTACAGACCCCAACAATACAAGAAAAAGTATAAATATAGGACCAGGGAGTATTCTA
TAACAGGAGACATAATAGGAGATATAAGAAAGCATATTGTAATTATGGAACAAAATGGAA
TAAACTTTAAAACAGGTAGCTAAAATTAAAAGACATTTAA----ATAAGA--------CA
ATAATCTTTAACACCTCAGGAGGGACCAGAAATTCAATGCATTTTTAATTGTGAGGGGAA
TTTTTCTATGAATACAACACAACTGTTTAATAGTACTTGGAAAATG---------AACCA
GAGGGGTAATGACAC-----------TATCACACTCCATGCAGAATAAAACAAATTATAA
ACATGTGGCAGGAGTAGGAAAGCAATGTATGCCCTCCCATCAGTGGAAATTAATGTTATC
AAATATTACAGGAATACTATTACAAGAGATGGTGGTA-----------TAATAGAAC
 
H1 H2 H3 H4 H5 H6 H7 H8 H9-H13